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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015944877.1_cds_XP_016487581.1_78297
CDS Infomation

[gene=LOC107807670] [db_xref=GeneID:107807670] [protein=protein HOTHEAD-like isoform X2] [protein_id=XP_016487581.1] [location=join(3446..3533,3902..4570,5267..5661,6093..6649,6732..6783)] [gbkey=CDS]
Sequence

ATGGATAGCTCAAGTAATTGGAGCCTCTCCATTTTTTCTTCTCTTCTTGCAATTCTCATT
CTCACCGTTCCTTGTTTTTCTGAGAAAGCCCCATATTCCACATTCGCAAAGGACGCTACA
TCAGCACCAGAGGTGGTATTCTTCGATTATATCGTTATAGGAGGAGGAACTTCTGGCTGT
GCATTAGCAGCAACTCTCTCACAACGTTCCAATGTTTTGTTATTGGAAAGAGGTGGCTTG
CCTTATGGTAACCCAAACATCACAAACATTACTGGTTTTGCCAACAATTTAGCAGACACT
TCTCCTTCATCGCCCGCACAACTCTTCATATCTACGGACGGTGTATTCAACCACCGTGGC
CGTGTCTTAGGCGGCGGCTCGGCCGTTAATGCCGGGTTCTTTTCACGGGCAAGCAAAGGC
TACGTTAAGAAAATGGGATGGGATCAAAAGTTAGTGAATGAAGCGTATGAATGGGTTGAA
AAGAAAGTGGCGTTTCAACCTCAGATAAAGCAGTGGCAATCGGCAGTGAGAAATGGTCTT
GTGGAAGTAGGGGTGAAACCATATAATGGTTTTACGTATGAACATTTGTTTGGAACTAAA
GTTGGTGGTACCATTTTTGATCCACAAGGTCATAGGCATACTGCTGCTGATTTATTAGAG
TNACATACCGCTGCTGATTTATTAGAGTATGCTGATCCTACCAAAATTACTGTTTATTTG
TATGCAACCGTGCAACAGATCTTGTTCAAAAAAGAAGGAGGAAGGAAGCCAAGAGCTTAT
GGAGTTCGGTTTCAAGATTCAAAAGGTAATAGCCACATGGCGTACCTGAAGGAGGGATCC
AAAAACGAGGTCATTTTGAGCGCTGGAGCATTGGGAAGCCCACAAATGTTAATGTTGAGT
GGTATTGGGCCGGCAAAGCAATTGAAGGCCCATGGGATTTATATTTTGGTGGATCAGCCC
ATGGTTGGTATGGGTATGTCAGATAACCCAATGAATGCTGTCTTTGTTCCGTCTCCTCAC
CCTGTTGAAGTTTCTCTTATTCAAGTGGTTGGTATTACTGGCTTCAAAAGTTACATTGAA
GCTGCCAGTGGGCCTTTGGAATTGGATTGGATGCGAAGGATCGCCCATGATTTTAAAAAT
ATAGCTAATCAGACCATGGACCCATTGAAAATACCTTCAGAATTGCACTTCCCCAAAGGC
ATACCTGGTATCAACCCACACCTTCTACACACCCCAATGCAAGCTGGTCTCATCCTAGAA
AAAGTAGCAGGACCATATTCAACAGGTTTTCTTGAACTTAAAAGCAAAGACCCAAATGAA
AATCCAAAAGTAACTTTCAACTATTTCAAAGATCCAAGAGACTTACAAAGATGTGTACAA
GGCATGAAAGCAATAGCAGAAGTCATAGAATCAACATTTTTCTCCAAATTCAGATACCCT
TTTACTTCAGCACAATCTTTAATGGATACAATGTTGACTTTTCCACTTAACTTGAGGCCA
AGACATTTGAGTGCCTCTGTTTCTTTAGAACAATTTTGTATAGACACAGTAATGACCATA
TGGCATTATCATGGAGGTTGTCAAGTTGGAAAAGTGGTTGATAGAAATTATAGAGTTTTT
GGGGTTGATGGATTGAGAGTTATTGATGGATCCACTTTTATATACTCCCCTGGCACTAAT
CCTCAAGCCACTGTCATGATGCTTGGAAGGTACATGGGGCAGAAGATTTTGAAAGAGAGA
CTTGCTGGTGGAAGGAAATAA

Peptide Sequence

PEP ID

XP_016487581.1
PEP Infomation

PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tabacum]
Sequence

MDSSSNWSLSIFSSLLAILILTVPCFSEKAPYSTFAKDATSAPEVVFFDYIVIGGGTSGC
ALAATLSQRSNVLLLERGGLPYGNPNITNITGFANNLADTSPSSPAQLFISTDGVFNHRG
RVLGGGSAVNAGFFSRASKGYVKKMGWDQKLVNEAYEWVEKKVAFQPQIKQWQSAVRNGL
VEVGVKPYNGFTYEHLFGTKVGGTIFDPQGHRHTAADLLEXHTAADLLEYADPTKITVYL
YATVQQILFKKEGGRKPRAYGVRFQDSKGNSHMAYLKEGSKNEVILSAGALGSPQMLMLS
GIGPAKQLKAHGIYILVDQPMVGMGMSDNPMNAVFVPSPHPVEVSLIQVVGITGFKSYIE
AASGPLELDWMRRIAHDFKNIANQTMDPLKIPSELHFPKGIPGINPHLLHTPMQAGLILE
KVAGPYSTGFLELKSKDPNENPKVTFNYFKDPRDLQRCVQGMKAIAEVIESTFFSKFRYP
FTSAQSLMDTMLTFPLNLRPRHLSASVSLEQFCIDTVMTIWHYHGGCQVGKVVDRNYRVF
GVDGLRVIDGSTFIYSPGTNPQATVMMLGRYMGQKILKERLAGGRK

Transcript Sequence

Gene sequence data has not been registered.